HL_8VS9_036

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_036 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.235

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VS9|1|23S|U|158
8VS9|1|23S|G|159
8VS9|1|23S|A|160
8VS9|1|23S|A|161
8VS9|1|23S|U|162
8VS9|1|23S|C|163
8VS9|1|23S|C|164
8VS9|1|23S|A|165
8VS9|1|23S|U|166
8VS9|1|23S|A|167
8VS9|1|23S|G|168

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L09

Large ribosomal subunit protein bL9

Chain L28

50S ribosomal protein L28