HL_8VS9_042

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8VS9|1|23S|G|386, 8VS9|1|23S|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_042 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1792

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VS9|1|23S|A|382
8VS9|1|23S|C|383
8VS9|1|23S|A|384
8VS9|1|23S|C|385
8VS9|1|23S|G|386
8VS9|1|23S|U|387
8VS9|1|23S|G|388
8VS9|1|23S|G|389
8VS9|1|23S|U|390
8VS9|1|23S|A|391
8VS9|1|23S|U|392

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L28

50S ribosomal protein L28

Chain L35

50S ribosomal protein L35