HL_8VVQ_039

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8VVQ|1|WA|A|1986

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_039 not in the Motif Atlas

Geometric match to HL_5D8H_001

Geometric discrepancy: 0.2704

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVQ|1|WA|C|1980
8VVQ|1|WA|A|1981
8VVQ|1|WA|U|1982
8VVQ|1|WA|G|1983
8VVQ|1|WA|G|1984
8VVQ|1|WA|A|1985
8VVQ|1|WA|A|1986
8VVQ|1|WA|G|1987
8VVQ|1|WA|U|1988
8VVQ|1|WA|C|1989
8VVQ|1|WA|G|1990

Current chains

Chain WA

28S rRNA

Nearby chains

Chain RA

L12

Chain UA

Transfer RNA; tRNA