HL_8VVQ_119

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

8VVQ|1|ZA|C|1418, 8VVQ|1|ZA|C|1419, 8VVQ|1|ZA|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVQ_119 not in the Motif Atlas

Geometric match to HL_5F9R_002

Geometric discrepancy: 0.2487

The information below is about HL_5F9R_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VVQ|1|ZA|C|1417
8VVQ|1|ZA|C|1418
8VVQ|1|ZA|C|1419
8VVQ|1|ZA|G|1420
8VVQ|1|ZA|A|1421
8VVQ|1|ZA|G|1422

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain QB

uS9

Chain TB

S19