HL_8VVT_028

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8VVT|1|WA|A|1989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_028 not in the Motif Atlas

Geometric match to HL_5D8H_001

Geometric discrepancy: 0.2462

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVT|1|WA|C|1983
8VVT|1|WA|A|1984
8VVT|1|WA|U|1985
8VVT|1|WA|G|1986
8VVT|1|WA|G|1987
8VVT|1|WA|A|1988
8VVT|1|WA|A|1989
8VVT|1|WA|G|1990
8VVT|1|WA|U|1991
8VVT|1|WA|C|1992
8VVT|1|WA|G|1993

Current chains

Chain WA

28S rRNA

Nearby chains

Chain RA

uL3

Chain v

eukaryotic elongation factor 2