HL_8VVT_051

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8VVT|1|WA|A|3765

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_051 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.1735

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVT|1|WA|G|3762
8VVT|1|WA|U|3763
8VVT|1|WA|A|3764
8VVT|1|WA|A|3765
8VVT|1|WA|C|3766
8VVT|1|WA|B8H|3767
8VVT|1|WA|A|3768
8VVT|1|WA|PSU|3769
8VVT|1|WA|G|3770
8VVT|1|WA|A|3771
8VVT|1|WA|C|3772

Current chains

Chain WA

28S rRNA

Nearby chains

Chain ZA

Small subunit ribosomal RNA; SSU rRNA

Chain v

eukaryotic elongation factor 2