HL_8VVT_063

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8VVT|1|WA|G|4480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_063 not in the Motif Atlas

Geometric match to HL_8CRE_061

Geometric discrepancy: 0.1155

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8VVT|1|WA|A|4479
8VVT|1|WA|G|4480
8VVT|1|WA|C|4481
8VVT|1|WA|A|4482
8VVT|1|WA|G|4483
8VVT|1|WA|A|4484
8VVT|1|WA|A|4485
8VVT|1|WA|U|4486

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

uL6

Chain LA

eL40

Chain v

eukaryotic elongation factor 2