HL_8VVT_095

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8VVT|1|ZA|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVT_095 not in the Motif Atlas

Geometric match to HL_8CRE_212

Geometric discrepancy: 0.238

The information below is about HL_8CRE_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVT|1|ZA|G|1054
8VVT|1|ZA|A|1055
8VVT|1|ZA|U|1056
8VVT|1|ZA|C|1057
8VVT|1|ZA|A|1058
8VVT|1|ZA|G|1059
8VVT|1|ZA|A|1060
8VVT|1|ZA|U|1061
8VVT|1|ZA|A|1062
8VVT|1|ZA|C|1063
8VVT|1|ZA|C|1064

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AC

eS26

Chain OB

uS11

Chain WA

Large subunit ribosomal RNA; LSU rRNA