HL_8VVU_074

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8VVU|1|WA|G|4477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVU_074 not in the Motif Atlas

Geometric match to HL_8CRE_061

Geometric discrepancy: 0.1594

The information below is about HL_8CRE_061

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

8VVU|1|WA|A|4476
8VVU|1|WA|G|4477
8VVU|1|WA|C|4478
8VVU|1|WA|A|4479
8VVU|1|WA|G|4480
8VVU|1|WA|A|4481
8VVU|1|WA|A|4482
8VVU|1|WA|U|4483

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40