HL_8VVV_017

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

8VVV|1|5|C|1487, 8VVV|1|5|G|1488, 8VVV|1|5|C|1491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_017 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2555

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8VVV|1|5|G|1485
8VVV|1|5|C|1486
8VVV|1|5|C|1487
8VVV|1|5|G|1488
8VVV|1|5|C|1489
8VVV|1|5|G|1490
8VVV|1|5|C|1491
8VVV|1|5|C|1492

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain i

eL36