HL_8VVV_049

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAC(B8H)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8VVV|1|5|A|3766

QA status

Modified nucleotides: B8H, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVV_049 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.2202

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8VVV|1|5|G|3763
8VVV|1|5|U|3764
8VVV|1|5|A|3765
8VVV|1|5|A|3766
8VVV|1|5|C|3767
8VVV|1|5|B8H|3768
8VVV|1|5|A|3769
8VVV|1|5|PSU|3770
8VVV|1|5|G|3771
8VVV|1|5|A|3772
8VVV|1|5|C|3773

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain v

eukaryotic elongation factor 2