HL_8VVV_093
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8VVV|1|9|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VVV_093 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.205
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8VVV|1|9|G|1054
8VVV|1|9|A|1055
8VVV|1|9|U|1056
8VVV|1|9|C|1057
8VVV|1|9|A|1058
8VVV|1|9|G|1059
8VVV|1|9|A|1060
8VVV|1|9|U|1061
8VVV|1|9|A|1062
8VVV|1|9|C|1063
8VVV|1|9|C|1064
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- uS11
- Chain aa
- eS26
Coloring options: