HL_8WHY_069

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8WHY|1|A|G|2975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHY_069 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.134

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

8WHY|1|A|C|2969
8WHY|1|A|U|2970
8WHY|1|A|G|2971
8WHY|1|A|A|2972
8WHY|1|A|A|2973
8WHY|1|A|A|2974
8WHY|1|A|G|2975
8WHY|1|A|C|2976
8WHY|1|A|A|2977
8WHY|1|A|U|2978
8WHY|1|A|C|2979
8WHY|1|A|U|2980
8WHY|1|A|A|2981
8WHY|1|A|A|2982
8WHY|1|A|G|2983

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6