HL_8Y5O_082

3D structure

PDB id

8Y5O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8Y5O|1|3|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5O_082 not in the Motif Atlas

Geometric match to HL_4LFB_006

Geometric discrepancy: 0.3058

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8Y5O|1|3|G|462
8Y5O|1|3|U|463
8Y5O|1|3|U|464
8Y5O|1|3|A|465
8Y5O|1|3|A|466
8Y5O|1|3|U|467
8Y5O|1|3|A|468
8Y5O|1|3|C|469
8Y5O|1|3|C|470

Current chains

Chain 3

16S rRNA

Nearby chains