HL_8Y5P_085
3D structure
- PDB id
- 8Y5P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 4 (subclass 1) containing mRNA with 24-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8Y5P_085 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.1632
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8Y5P|1|3|C|689
8Y5P|1|3|G|690
8Y5P|1|3|G|691
8Y5P|1|3|U|692
8Y5P|1|3|G|693
8Y5P|1|3|A|694
8Y5P|1|3|A|695
8Y5P|1|3|A|696
8Y5P|1|3|U|697
8Y5P|1|3|G|698
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L
- 30S ribosomal protein S7
- Chain P
- 30S ribosomal protein S11
- Chain Z
- 30S ribosomal protein S21
Coloring options: