HL_8Y5R_033

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_033 not in the Motif Atlas

Geometric match to HL_5J7L_167

Geometric discrepancy: 0.1739

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8Y5R|1|1|C|1363
8Y5R|1|1|G|1364
8Y5R|1|1|A|1365
8Y5R|1|1|A|1366
8Y5R|1|1|A|1367
8Y5R|1|1|G|1368

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain x

50S ribosomal protein L28