HL_8Y5R_066

3D structure

PDB id

8Y5R (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 1) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8Y5R|1|1|U|2797, 8Y5R|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5R_066 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.276

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8Y5R|1|1|C|2795
8Y5R|1|1|U|2796
8Y5R|1|1|U|2797
8Y5R|1|1|U|2798
8Y5R|1|1|A|2799
8Y5R|1|1|A|2800
8Y5R|1|1|G|2801

Current chains

Chain 1

23S rRNA

Nearby chains