HL_8Y5T_095

3D structure

PDB id

8Y5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Transcription translation coupling complex in TTC-B state 5 (subclass 3) containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and fusidic acid

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8Y5T|1|3|G|1094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8Y5T_095 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.0792

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8Y5T|1|3|G|1089
8Y5T|1|3|U|1090
8Y5T|1|3|U|1091
8Y5T|1|3|A|1092
8Y5T|1|3|A|1093
8Y5T|1|3|G|1094
8Y5T|1|3|U|1095
8Y5T|1|3|C|1096

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain L

30S ribosomal protein S7

Chain Z

30S ribosomal protein S21