8Y5T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8Y5T_001 | Pseudoknot geometry | ||
| HL_8Y5T_002 | No text annotation | ||
| HL_8Y5T_003 | No text annotation | ||
| HL_8Y5T_004 | No text annotation | ||
| HL_8Y5T_005 | No text annotation | ||
| HL_8Y5T_006 | No text annotation | ||
| HL_8Y5T_007 | No text annotation | ||
| HL_8Y5T_008 | No text annotation | ||
| HL_8Y5T_009 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5T_010 | T-loop with unstacked turn | ||
| HL_8Y5T_011 | No text annotation | ||
| HL_8Y5T_012 | Pseudoknot geometry | ||
| HL_8Y5T_013 | GNRA | ||
| HL_8Y5T_014 | GNRA | ||
| HL_8Y5T_015 | No text annotation | ||
| HL_8Y5T_016 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5T_017 | No text annotation | ||
| HL_8Y5T_018 | GNRA | ||
| HL_8Y5T_019 | No text annotation | ||
| HL_8Y5T_020 | GNRA wlth tandem sheared | ||
| HL_8Y5T_021 | No text annotation | ||
| HL_8Y5T_022 | UNCG variation | ||
| HL_8Y5T_023 | No text annotation | ||
| HL_8Y5T_024 | No text annotation | ||
| HL_8Y5T_025 | GNRA | ||
| HL_8Y5T_026 | No text annotation | ||
| HL_8Y5T_027 | No text annotation | ||
| HL_8Y5T_028 | GNRA wlth tandem sheared | ||
| HL_8Y5T_029 | No text annotation | ||
| HL_8Y5T_030 | GNRA | ||
| HL_8Y5T_031 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5T_032 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5T_033 | GNRA | ||
| HL_8Y5T_034 | No text annotation | ||
| HL_8Y5T_035 | Mini UNCG with extended bulge | ||
| HL_8Y5T_036 | Pseudoknot geometry with 3' bulge | ||
| HL_8Y5T_037 | UNCG | ||
| HL_8Y5T_038 | Mini UNCG | ||
| HL_8Y5T_039 | No text annotation | ||
| HL_8Y5T_040 | GNRA | ||
| HL_8Y5T_041 | UNCG | ||
| HL_8Y5T_042 | No text annotation | ||
| HL_8Y5T_043 | No text annotation | ||
| HL_8Y5T_044 | No text annotation | ||
| HL_8Y5T_045 | GNRA related | ||
| HL_8Y5T_046 | No text annotation | ||
| HL_8Y5T_047 | No text annotation | ||
| HL_8Y5T_048 | No text annotation | ||
| HL_8Y5T_049 | No text annotation | ||
| HL_8Y5T_050 | No text annotation | ||
| HL_8Y5T_051 | No text annotation | ||
| HL_8Y5T_052 | No text annotation | ||
| HL_8Y5T_053 | No text annotation | ||
| HL_8Y5T_054 | No text annotation | ||
| HL_8Y5T_055 | Pseudoknot geometry | ||
| HL_8Y5T_056 | GNRA | ||
| HL_8Y5T_057 | GNRA | ||
| HL_8Y5T_058 | No text annotation | ||
| HL_8Y5T_059 | No text annotation | ||
| HL_8Y5T_060 | GNRA variation | ||
| HL_8Y5T_061 | No text annotation | ||
| HL_8Y5T_062 | GNRA | ||
| HL_8Y5T_063 | GNRA | ||
| HL_8Y5T_064 | Ribsomal LSU H95 | ||
| HL_8Y5T_065 | No text annotation | ||
| HL_8Y5T_066 | UNCG variation | ||
| HL_8Y5T_067 | No text annotation | ||
| HL_8Y5T_068 | GNRA | ||
| HL_8Y5T_069 | No text annotation | ||
| HL_8Y5T_070 | No text annotation | ||
| HL_8Y5T_071 | Mini UNCG | ||
| HL_8Y5T_072 | No text annotation | ||
| HL_8Y5T_073 | No text annotation | ||
| HL_8Y5T_074 | GNRA | ||
| HL_8Y5T_075 | GNRA | ||
| HL_8Y5T_076 | No text annotation | ||
| HL_8Y5T_077 | GNRA related | ||
| HL_8Y5T_078 | GNRA | ||
| HL_8Y5T_079 | No text annotation | ||
| HL_8Y5T_080 | UNCG | ||
| HL_8Y5T_081 | GNRA | ||
| HL_8Y5T_082 | UNCG | ||
| HL_8Y5T_083 | GNRA wlth extra near cWW | ||
| HL_8Y5T_084 | GNRA variation | ||
| HL_8Y5T_085 | GNRA-like with tWH | ||
| HL_8Y5T_086 | No text annotation | ||
| HL_8Y5T_087 | GNRA | ||
| HL_8Y5T_088 | No text annotation | ||
| HL_8Y5T_089 | No text annotation | ||
| HL_8Y5T_090 | GNRA | ||
| HL_8Y5T_091 | GNRA | ||
| HL_8Y5T_092 | No text annotation | ||
| HL_8Y5T_093 | GNRA | ||
| HL_8Y5T_094 | GNRA | ||
| HL_8Y5T_095 | T-loop related | ||
| HL_8Y5T_096 | No text annotation | ||
| HL_8Y5T_097 | GNRA | ||
| HL_8Y5T_098 | GNRA | ||
| HL_8Y5T_099 | T-loop with 3 stacked bulged bases | ||
| HL_8Y5T_100 | No text annotation | ||
| HL_8Y5T_101 | No text annotation | ||
| HL_8Y5T_102 | GNRA | ||
| HL_8Y5T_103 | No text annotation | ||
| HL_8Y5T_104 | No text annotation | ||
| HL_8Y5T_105 | T-loop with 2 stacked bulged bases | ||
| HL_8Y5T_106 | No text annotation | ||
| HL_8Y5T_107 | No text annotation | ||
| HL_8Y5T_108 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8Y5T_001 | Triple sheared with non-canonical cWW | ||
| IL_8Y5T_002 | Single bulged A | ||
| IL_8Y5T_003 | Minor groove platform | ||
| IL_8Y5T_004 | No text annotation | ||
| IL_8Y5T_005 | Single stack bend | ||
| IL_8Y5T_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8Y5T_007 | No text annotation | ||
| IL_8Y5T_008 | No text annotation | ||
| IL_8Y5T_009 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_010 | No text annotation | ||
| IL_8Y5T_011 | No text annotation | ||
| IL_8Y5T_012 | Double sheared | ||
| IL_8Y5T_013 | AAA cross-strand stack | ||
| IL_8Y5T_014 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_015 | tHW-tHW cross-strand stack | ||
| IL_8Y5T_016 | Single bulged A | ||
| IL_8Y5T_017 | Single bulged G | ||
| IL_8Y5T_018 | Triple sheared | ||
| IL_8Y5T_019 | Major groove platform | ||
| IL_8Y5T_020 | Multiple bulged bases | ||
| IL_8Y5T_021 | No text annotation | ||
| IL_8Y5T_022 | No text annotation | ||
| IL_8Y5T_023 | Stack outside cWW | ||
| IL_8Y5T_024 | Single stack bend | ||
| IL_8Y5T_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8Y5T_026 | Single bulged G | ||
| IL_8Y5T_027 | C-loop with bulged stacked A's | ||
| IL_8Y5T_028 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_029 | Double sheared with non-canonical cWW | ||
| IL_8Y5T_030 | No text annotation | ||
| IL_8Y5T_031 | Single bulged C | ||
| IL_8Y5T_032 | UAA/GAN | ||
| IL_8Y5T_033 | SSU/LSU pseudoknot | ||
| IL_8Y5T_034 | Single bulged U | ||
| IL_8Y5T_035 | Kink-turn related | ||
| IL_8Y5T_036 | No text annotation | ||
| IL_8Y5T_037 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_038 | Tandem non-canonical cWW pairs | ||
| IL_8Y5T_039 | Kink-turn | ||
| IL_8Y5T_040 | No text annotation | ||
| IL_8Y5T_041 | Major groove platform | ||
| IL_8Y5T_042 | Isolated cWS basepair | ||
| IL_8Y5T_043 | No text annotation | ||
| IL_8Y5T_044 | Kink-turn | ||
| IL_8Y5T_045 | C-loop | ||
| IL_8Y5T_046 | UAA/GAN | ||
| IL_8Y5T_047 | tSH-tHW-tHS | ||
| IL_8Y5T_048 | No text annotation | ||
| IL_8Y5T_049 | UAA/GAN | ||
| IL_8Y5T_050 | Tandem non-canonical cWW pairs | ||
| IL_8Y5T_051 | tSH-tHW | ||
| IL_8Y5T_052 | Single bulged U | ||
| IL_8Y5T_053 | No text annotation | ||
| IL_8Y5T_054 | tSH-tHW-tHS | ||
| IL_8Y5T_055 | 180 degree turn | ||
| IL_8Y5T_056 | Single bulged A | ||
| IL_8Y5T_057 | UAA/GAN variation | ||
| IL_8Y5T_058 | No text annotation | ||
| IL_8Y5T_059 | Isolated tWW turn | ||
| IL_8Y5T_060 | No text annotation | ||
| IL_8Y5T_061 | tSH-tSH-tHH-tHS | ||
| IL_8Y5T_062 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_8Y5T_063 | Triple sheared | ||
| IL_8Y5T_064 | Single bulged A | ||
| IL_8Y5T_065 | Kink-turn related | ||
| IL_8Y5T_066 | Minor groove platform, major groove intercalation | ||
| IL_8Y5T_067 | Major groove intercalation | ||
| IL_8Y5T_068 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5T_069 | No text annotation | ||
| IL_8Y5T_070 | UAA/GAN related | ||
| IL_8Y5T_071 | No text annotation | ||
| IL_8Y5T_072 | Major groove platform | ||
| IL_8Y5T_073 | No text annotation | ||
| IL_8Y5T_074 | Single bulged U | ||
| IL_8Y5T_075 | Minor groove platform | ||
| IL_8Y5T_076 | Isolated tHS basepair with bulges | ||
| IL_8Y5T_077 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_078 | No text annotation | ||
| IL_8Y5T_079 | No text annotation | ||
| IL_8Y5T_080 | No text annotation | ||
| IL_8Y5T_081 | Single bulged U | ||
| IL_8Y5T_082 | Double sheared | ||
| IL_8Y5T_083 | No text annotation | ||
| IL_8Y5T_084 | Single stack bend | ||
| IL_8Y5T_085 | Major groove platform | ||
| IL_8Y5T_086 | No text annotation | ||
| IL_8Y5T_087 | Double sheared with non-canonical cWW | ||
| IL_8Y5T_088 | Major groove platform | ||
| IL_8Y5T_089 | Isolated non-canonical cWW with bulges | ||
| IL_8Y5T_090 | No text annotation | ||
| IL_8Y5T_091 | Major groove platform with intercalation | ||
| IL_8Y5T_092 | Single bulged A | ||
| IL_8Y5T_093 | tSH-tHS-tHW | ||
| IL_8Y5T_094 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8Y5T_095 | C-loop | ||
| IL_8Y5T_096 | UAA/GAN related, with intercalation | ||
| IL_8Y5T_097 | Multiple bulged bases | ||
| IL_8Y5T_098 | UAA/GAN with extra cWW | ||
| IL_8Y5T_099 | No text annotation | ||
| IL_8Y5T_100 | Major groove intercalation | ||
| IL_8Y5T_101 | Multiple bulged bases with non-canonical cWW | ||
| IL_8Y5T_102 | tHS double platform | ||
| IL_8Y5T_103 | Major groove intercalation | ||
| IL_8Y5T_104 | No text annotation | ||
| IL_8Y5T_105 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5T_106 | Symmetric double minor groove platform | ||
| IL_8Y5T_107 | Bacterial 5S Loop E | ||
| IL_8Y5T_108 | Single bulged G | ||
| IL_8Y5T_109 | Single bulged A | ||
| IL_8Y5T_110 | No text annotation | ||
| IL_8Y5T_111 | Minor groove platform | ||
| IL_8Y5T_112 | Multiple bulged bases | ||
| IL_8Y5T_113 | Minor groove platform with extra cWW | ||
| IL_8Y5T_114 | Minor groove platform | ||
| IL_8Y5T_115 | No text annotation | ||
| IL_8Y5T_116 | No text annotation | ||
| IL_8Y5T_117 | No text annotation | ||
| IL_8Y5T_118 | Isolated cWH basepair | ||
| IL_8Y5T_119 | tWH-tWH-tHW-tHW | ||
| IL_8Y5T_120 | Minor groove platform | ||
| IL_8Y5T_121 | Kink-turn with non-sequential stacking | ||
| IL_8Y5T_122 | No text annotation | ||
| IL_8Y5T_123 | C-loop | ||
| IL_8Y5T_124 | Single bulged U | ||
| IL_8Y5T_125 | C-loop | ||
| IL_8Y5T_126 | Single bulged G | ||
| IL_8Y5T_127 | No text annotation | ||
| IL_8Y5T_128 | No text annotation | ||
| IL_8Y5T_129 | tSH-tHW-tWW | ||
| IL_8Y5T_130 | No text annotation | ||
| IL_8Y5T_131 | SSU/LSU pseudoknot | ||
| IL_8Y5T_132 | No text annotation | ||
| IL_8Y5T_133 | No text annotation | ||
| IL_8Y5T_134 | tSH-tHW-tHS | ||
| IL_8Y5T_135 | Major groove platform | ||
| IL_8Y5T_136 | Major groove minor groove platform; mini C-loop | ||
| IL_8Y5T_137 | No text annotation | ||
| IL_8Y5T_138 | Major groove platform; stack outside cWW | ||
| IL_8Y5T_139 | Single stack bend | ||
| IL_8Y5T_140 | Tandem non-canonical cWW pairs | ||
| IL_8Y5T_141 | Triple non-canonical cWW pairs | ||
| IL_8Y5T_142 | Kink-turn | ||
| IL_8Y5T_143 | Left turn | ||
| IL_8Y5T_144 | tSH-tHW-tHS | ||
| IL_8Y5T_145 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_8Y5T_146 | Single bulged A | ||
| IL_8Y5T_147 | Single bulged G | ||
| IL_8Y5T_148 | Minor groove platform | ||
| IL_8Y5T_149 | Minor groove platform | ||
| IL_8Y5T_150 | Minor groove platform | ||
| IL_8Y5T_151 | Single stack bend | ||
| IL_8Y5T_152 | No text annotation | ||
| IL_8Y5T_153 | Single bulged U | ||
| IL_8Y5T_154 | Isolated cWS basepair | ||
| IL_8Y5T_155 | Minor groove platform | ||
| IL_8Y5T_156 | Single bulged A | ||
| IL_8Y5T_157 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_158 | No text annotation | ||
| IL_8Y5T_159 | Minor groove platform | ||
| IL_8Y5T_160 | No text annotation | ||
| IL_8Y5T_161 | No text annotation | ||
| IL_8Y5T_162 | 180 degree turn | ||
| IL_8Y5T_163 | Double sheared with non-canonical cWW | ||
| IL_8Y5T_164 | No text annotation | ||
| IL_8Y5T_165 | No text annotation | ||
| IL_8Y5T_166 | No text annotation | ||
| IL_8Y5T_167 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_168 | No text annotation | ||
| IL_8Y5T_169 | Isolated non-canonical cWW pair | ||
| IL_8Y5T_170 | Double sheared | ||
| IL_8Y5T_171 | Triple sheared related | ||
| IL_8Y5T_172 | Single bulged A | ||
| IL_8Y5T_173 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8Y5T_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8Y5T_001 | No text annotation | ||
| J3_8Y5T_002 | No text annotation | ||
| J3_8Y5T_003 | No text annotation | ||
| J3_8Y5T_004 | No text annotation | ||
| J3_8Y5T_005 | No text annotation | ||
| J3_8Y5T_006 | No text annotation | ||
| J3_8Y5T_007 | No text annotation | ||
| J3_8Y5T_008 | No text annotation | ||
| J3_8Y5T_009 | No text annotation | ||
| J3_8Y5T_010 | No text annotation | ||
| J3_8Y5T_011 | No text annotation | ||
| J3_8Y5T_012 | No text annotation | ||
| J3_8Y5T_013 | Kink-turn 3-way junction | ||
| J3_8Y5T_014 | No text annotation | ||
| J3_8Y5T_015 | No text annotation | ||
| J3_8Y5T_016 | No text annotation | ||
| J3_8Y5T_017 | No text annotation | ||
| J3_8Y5T_018 | No text annotation | ||
| J3_8Y5T_019 | No text annotation | ||
| J3_8Y5T_020 | No text annotation | ||
| J3_8Y5T_021 | No text annotation | ||
| J3_8Y5T_022 | No text annotation | ||
| J3_8Y5T_023 | No text annotation | ||
| J3_8Y5T_024 | No text annotation | ||
| J3_8Y5T_025 | No text annotation | ||
| J3_8Y5T_026 | No text annotation | ||
| J3_8Y5T_027 | No text annotation | ||
| J3_8Y5T_028 | No text annotation | ||
| J3_8Y5T_029 | No text annotation | ||
| J3_8Y5T_030 | No text annotation | ||
| J3_8Y5T_031 | No text annotation | ||
| J3_8Y5T_032 | No text annotation | ||
| J3_8Y5T_033 | No text annotation | ||
| J3_8Y5T_034 | No text annotation | ||
| J3_8Y5T_035 | No text annotation | ||
| J4_8Y5T_001 | No text annotation | ||
| J4_8Y5T_002 | No text annotation | ||
| J4_8Y5T_003 | No text annotation | ||
| J4_8Y5T_004 | No text annotation | ||
| J4_8Y5T_005 | No text annotation | ||
| J4_8Y5T_006 | No text annotation | ||
| J4_8Y5T_007 | No text annotation | ||
| J4_8Y5T_008 | No text annotation | ||
| J4_8Y5T_009 | No text annotation | ||
| J4_8Y5T_010 | No text annotation | ||
| J4_8Y5T_011 | No text annotation | ||
| J4_8Y5T_012 | No text annotation | ||
| J4_8Y5T_013 | No text annotation | ||
| J4_8Y5T_014 | No text annotation | ||
| J5_8Y5T_001 | No text annotation | ||
| J5_8Y5T_002 | No text annotation | ||
| J5_8Y5T_004 | No text annotation | ||
| J5_8Y5T_005 | No text annotation | ||
| J5_8Y5T_006 | No text annotation | ||
| J5_8Y5T_007 | No text annotation | ||
| J5_8Y5T_008 | No text annotation | ||
| J5_8Y5T_009 | No text annotation | ||
| J6_8Y5T_001 | No text annotation | ||
| J6_8Y5T_002 | No text annotation | ||
| J7_8Y5T_001 | No text annotation | ||
| J7_8Y5T_002 | No text annotation |
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