HL_8YLR_019

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_019 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.2134

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8YLR|1|2|A|900
8YLR|1|2|G|901
8YLR|1|2|G|902
8YLR|1|2|U|903
8YLR|1|2|G|904
8YLR|1|2|A|905
8YLR|1|2|A|906
8YLR|1|2|A|907
8YLR|1|2|U|908
8YLR|1|2|U|909

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain SQ

Small ribosomal subunit protein eS1A

Chain SZ

Small ribosomal subunit protein uS11B

Chain u

Transfer RNA; tRNA