HL_8YLR_026

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8YLR|1|2|G|1243, 8YLR|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_026 not in the Motif Atlas

Homologous match to HL_8C3A_218

Geometric discrepancy: 0.3123

The information below is about HL_8C3A_218

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_81538.1

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8YLR|1|2|A|1238
8YLR|1|2|U|1239
8YLR|1|2|U|1240
8YLR|1|2|G|1241
8YLR|1|2|A|1242
8YLR|1|2|G|1243
8YLR|1|2|A|1244
8YLR|1|2|G|1245
8YLR|1|2|C|1246
8YLR|1|2|U|1247

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31