HL_8YLR_083

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8YLR|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8YLR_083 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1393

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8YLR|1|A|U|2292
8YLR|1|A|C|2293
8YLR|1|A|U|2294
8YLR|1|A|A|2295
8YLR|1|A|A|2296
8YLR|1|A|U|2297
8YLR|1|A|U|2298
8YLR|1|A|A|2299
8YLR|1|A|G|2300

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain X

Large ribosomal subunit protein uL14A