HL_8YLR_109
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8YLR|1|C|U|81, 8YLR|1|C|C|84, 8YLR|1|C|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_109 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2826
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8YLR|1|C|U|69
8YLR|1|C|G|70
8YLR|1|C|A|71
8YLR|1|C|A|72
8YLR|1|C|U|73
8YLR|1|C|U|74
8YLR|1|C|G|75
8YLR|1|C|C|76
8YLR|1|C|A|77
8YLR|1|C|G|78
8YLR|1|C|A|79
8YLR|1|C|A|80
8YLR|1|C|U|81
8YLR|1|C|U|82
8YLR|1|C|C|83
8YLR|1|C|C|84
8YLR|1|C|G|85
8YLR|1|C|U|86
8YLR|1|C|G|87
8YLR|1|C|A|88
8YLR|1|C|A|89
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Large ribosomal subunit protein uL24A
- Chain j
- Large ribosomal subunit protein uL29A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: