HL_8YLR_120
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8YLR|1|A|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8YLR_120 not in the Motif Atlas
- Homologous match to HL_8CRE_061
- Geometric discrepancy: 0.2091
- The information below is about HL_8CRE_061
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
8YLR|1|A|A|2897
8YLR|1|A|G|2898
8YLR|1|A|C|2899
8YLR|1|A|A|2900
8YLR|1|A|G|2901
8YLR|1|A|A|2902
8YLR|1|A|A|2903
8YLR|1|A|U|2904
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain K
- Large ribosomal subunit protein uL6A
- Chain o
- Large ribosomal subunit protein eL40A
- Chain x
- Elongation factor 2
Coloring options: