HL_8ZDC_005

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

8ZDC|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZDC_005 not in the Motif Atlas

Homologous match to HL_8C3A_197

Geometric discrepancy: 0.3042

The information below is about HL_8C3A_197

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8ZDC|1|2|G|288
8ZDC|1|2|G|289
8ZDC|1|2|U|290
8ZDC|1|2|G|291
8ZDC|1|2|A|292
8ZDC|1|2|C|293
8ZDC|1|2|U|294
8ZDC|1|2|C|295

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain L

Small ribosomal subunit protein uS17