HL_8ZGR_007

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8ZGR|1|LA|G|218, 8ZGR|1|LA|A|219, 8ZGR|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.0574

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8ZGR|1|LA|G|216
8ZGR|1|LA|U|217
8ZGR|1|LA|G|218
8ZGR|1|LA|A|219
8ZGR|1|LA|G|220
8ZGR|1|LA|A|221
8ZGR|1|LA|A|222
8ZGR|1|LA|U|223
8ZGR|1|LA|C|224

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A