HL_8ZGR_008
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8ZGR|1|LA|G|283, 8ZGR|1|LA|A|284, 8ZGR|1|LA|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGR_008 not in the Motif Atlas
- Homologous match to HL_8CRE_008
- Geometric discrepancy: 0.1671
- The information below is about HL_8CRE_008
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8ZGR|1|LA|U|278
8ZGR|1|LA|U|279
8ZGR|1|LA|U|280
8ZGR|1|LA|G|281
8ZGR|1|LA|G|282
8ZGR|1|LA|G|283
8ZGR|1|LA|A|284
8ZGR|1|LA|A|285
8ZGR|1|LA|U|286
8ZGR|1|LA|G|287
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lq
- Large ribosomal subunit protein eL42A
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