HL_8ZGR_048

3D structure

PDB id

8ZGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/A tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8ZGR|1|LA|A|2255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGR_048 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.1387

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8ZGR|1|LA|G|2252
8ZGR|1|LA|U|2253
8ZGR|1|LA|A|2254
8ZGR|1|LA|A|2255
8ZGR|1|LA|C|2256
8ZGR|1|LA|U|2257
8ZGR|1|LA|A|2258
8ZGR|1|LA|U|2259
8ZGR|1|LA|G|2260
8ZGR|1|LA|A|2261
8ZGR|1|LA|C|2262

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sg

Small ribosomal subunit protein eS30A

Chain Ta

Transfer RNA; tRNA