HL_8ZGR_084
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUAGUGGC
- Length
- 9 nucleotides
- Bulged bases
- 8ZGR|1|S2|G|337
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGR_084 not in the Motif Atlas
- Geometric match to HL_8CRE_198
- Geometric discrepancy: 0.1341
- The information below is about HL_8CRE_198
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36455.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8ZGR|1|S2|G|330
8ZGR|1|S2|A|331
8ZGR|1|S2|U|332
8ZGR|1|S2|A|333
8ZGR|1|S2|G|334
8ZGR|1|S2|U|335
8ZGR|1|S2|G|336
8ZGR|1|S2|G|337
8ZGR|1|S2|C|338
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SX
- Small ribosomal subunit protein uS17A
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