HL_8ZGY_007

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|G|218, 8ZGY|1|LA|A|219, 8ZGY|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.0391

The information below is about HL_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8ZGY|1|LA|G|216
8ZGY|1|LA|U|217
8ZGY|1|LA|G|218
8ZGY|1|LA|A|219
8ZGY|1|LA|G|220
8ZGY|1|LA|A|221
8ZGY|1|LA|A|222
8ZGY|1|LA|U|223
8ZGY|1|LA|C|224

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A