HL_8ZGY_049

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8ZGY|1|LA|U|2297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZGY_049 not in the Motif Atlas

Homologous match to HL_8CRE_048

Geometric discrepancy: 0.0626

The information below is about HL_8CRE_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8ZGY|1|LA|U|2291
8ZGY|1|LA|C|2292
8ZGY|1|LA|U|2293
8ZGY|1|LA|A|2294
8ZGY|1|LA|A|2295
8ZGY|1|LA|U|2296
8ZGY|1|LA|U|2297
8ZGY|1|LA|A|2298
8ZGY|1|LA|G|2299

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LX

Large ribosomal subunit protein uL14A

Chain S2

Small subunit ribosomal RNA; SSU rRNA