3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
8ZGY|1|S2|U|1004
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8ZGY_097 not in the Motif Atlas
Geometric match to HL_4LFB_017
Geometric discrepancy: 0.1156
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8ZGY|1|S2|G|997
8ZGY|1|S2|A|998
8ZGY|1|S2|U|999
8ZGY|1|S2|C|1000
8ZGY|1|S2|A|1001
8ZGY|1|S2|G|1002
8ZGY|1|S2|A|1003
8ZGY|1|S2|U|1004
8ZGY|1|S2|A|1005
8ZGY|1|S2|C|1006
8ZGY|1|S2|C|1007

Current chains

Chain S2
chain 2 18S rRNA (1799-MER)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain SZ
Small ribosomal subunit protein uS11B
Chain Se
Small ribosomal subunit protein eS26B
Chain Tb
Transfer RNA; tRNA
Chain mR
RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')

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