HL_8ZGY_097
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8ZGY|1|S2|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZGY_097 not in the Motif Atlas
- Geometric match to HL_4LFB_017
- Geometric discrepancy: 0.1156
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8ZGY|1|S2|G|997
8ZGY|1|S2|A|998
8ZGY|1|S2|U|999
8ZGY|1|S2|C|1000
8ZGY|1|S2|A|1001
8ZGY|1|S2|G|1002
8ZGY|1|S2|A|1003
8ZGY|1|S2|U|1004
8ZGY|1|S2|A|1005
8ZGY|1|S2|C|1006
8ZGY|1|S2|C|1007
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain SZ
- Small ribosomal subunit protein uS11B
- Chain Se
- Small ribosomal subunit protein eS26B
- Chain Tb
- Transfer RNA; tRNA
- Chain mR
- RNA (5'-R(P*GP*AP*UP*CP*CP*UP*UP*AP*AP*C)-3')
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