HL_8ZH3_007

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8ZH3|1|LA|G|218, 8ZH3|1|LA|A|219, 8ZH3|1|LA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8ZH3_007 not in the Motif Atlas

Homologous match to HL_8CRE_007

Geometric discrepancy: 0.0499

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8ZH3|1|LA|G|216
8ZH3|1|LA|U|217
8ZH3|1|LA|G|218
8ZH3|1|LA|A|219
8ZH3|1|LA|G|220
8ZH3|1|LA|A|221
8ZH3|1|LA|A|222
8ZH3|1|LA|U|223
8ZH3|1|LA|C|224

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

Large ribosomal subunit protein uL4A

Chain La

Large ribosomal subunit protein uL24A