HL_8ZHC_007
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 8ZHC|1|LA|G|218, 8ZHC|1|LA|A|219, 8ZHC|1|LA|G|220
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_007 not in the Motif Atlas
- Homologous match to HL_8CRE_007
- Geometric discrepancy: 0.1
- The information below is about HL_8CRE_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
8ZHC|1|LA|G|216
8ZHC|1|LA|U|217
8ZHC|1|LA|G|218
8ZHC|1|LA|A|219
8ZHC|1|LA|G|220
8ZHC|1|LA|A|221
8ZHC|1|LA|A|222
8ZHC|1|LA|U|223
8ZHC|1|LA|C|224
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain La
- Large ribosomal subunit protein uL24A
Coloring options: