HL_8ZHC_048
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|2255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8ZHC_048 not in the Motif Atlas
- Homologous match to HL_8CRE_047
- Geometric discrepancy: 0.2094
- The information below is about HL_8CRE_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25847.2
- Basepair signature
- cWW-F-cSH-tHW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8ZHC|1|LA|G|2252
8ZHC|1|LA|U|2253
8ZHC|1|LA|A|2254
8ZHC|1|LA|A|2255
8ZHC|1|LA|C|2256
8ZHC|1|LA|U|2257
8ZHC|1|LA|A|2258
8ZHC|1|LA|U|2259
8ZHC|1|LA|G|2260
8ZHC|1|LA|A|2261
8ZHC|1|LA|C|2262
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ta
- Transfer RNA; tRNA
- Chain eR
- Eukaryotic peptide chain release factor subunit 1
- Chain mR
- RNA (5'-R(P*GP*AP*CP*CP*CP*UP*UP*AP*AP*C)-3')
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