HL_9AXU_045

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9AXU|1|2|A|2344

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AXU_045 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.5476

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|G|2341
9AXU|1|2|U|2342
9AXU|1|2|A|2343
9AXU|1|2|A|2344
9AXU|1|2|C|2345
9AXU|1|2|U|2346
9AXU|1|2|A|2347
9AXU|1|2|U|2348
9AXU|1|2|G|2349
9AXU|1|2|A|2350
9AXU|1|2|C|2351

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL16A