HL_9B0S_059

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9B0S|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_059 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3795

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9B0S|1|L5|G|3757
9B0S|1|L5|U|3758
9B0S|1|L5|A|3759
9B0S|1|L5|A|3760
9B0S|1|L5|C|3761
9B0S|1|L5|U|3762
9B0S|1|L5|A|3763
9B0S|1|L5|U|3764
9B0S|1|L5|G|3765
9B0S|1|L5|A|3766
9B0S|1|L5|C|3767

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA