HL_9B11_010
3D structure
- PDB id
- 9B11 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating without CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- GUGUGAGGC
- Length
- 9 nucleotides
- Bulged bases
- 9B11|1|L5|G|232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B11_010 not in the Motif Atlas
- Homologous match to HL_8CRE_007
- Geometric discrepancy: 0.4236
- The information below is about HL_8CRE_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
9B11|1|L5|G|230
9B11|1|L5|U|231
9B11|1|L5|G|232
9B11|1|L5|U|233
9B11|1|L5|G|234
9B11|1|L5|A|235
9B11|1|L5|G|236
9B11|1|L5|G|237
9B11|1|L5|C|238
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
Coloring options: