HL_9B11_057

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9B11|1|L5|A|3760

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B11_057 not in the Motif Atlas

Homologous match to HL_8CRE_047

Geometric discrepancy: 0.3609

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9B11|1|L5|G|3757
9B11|1|L5|U|3758
9B11|1|L5|A|3759
9B11|1|L5|A|3760
9B11|1|L5|C|3761
9B11|1|L5|U|3762
9B11|1|L5|A|3763
9B11|1|L5|U|3764
9B11|1|L5|G|3765
9B11|1|L5|A|3766
9B11|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

eEF2

Chain S2

Small subunit ribosomal RNA; SSU rRNA