3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
9B11|1|L5|G|4475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_071 not in the Motif Atlas
Homologous match to HL_8P9A_173
Geometric discrepancy: 0.0721
The information below is about HL_8P9A_173
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_46665.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
15

Unit IDs

9B11|1|L5|A|4474
9B11|1|L5|G|4475
9B11|1|L5|C|4476
9B11|1|L5|A|4477
9B11|1|L5|G|4478
9B11|1|L5|A|4479
9B11|1|L5|A|4480
9B11|1|L5|U|4481

Current chains

Chain L5
28S rRNA

Nearby chains

Chain CB
eEF2
Chain LH
60S ribosomal protein L9
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


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