3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
ACUUUAAAUCCUU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_100 not in the Motif Atlas
Homologous match to HL_8P9A_203
Geometric discrepancy: 0.17
The information below is about HL_8P9A_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68749.1
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

9B11|1|S2|A|569
9B11|1|S2|C|570
9B11|1|S2|U|571
9B11|1|S2|U|572
9B11|1|S2|U|573
9B11|1|S2|A|574
9B11|1|S2|A|575
9B11|1|S2|A|576
9B11|1|S2|U|577
9B11|1|S2|C|578
9B11|1|S2|C|579
9B11|1|S2|U|580
9B11|1|S2|U|581

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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