HL_9B24_069

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGACAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B24_069 not in the Motif Atlas

Homologous match to HL_5J7L_167

Geometric discrepancy: 0.2351

The information below is about HL_5J7L_167

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9B24|1|Y|C|1478
9B24|1|Y|G|1479
9B24|1|Y|A|1480
9B24|1|Y|C|1481
9B24|1|Y|A|1482
9B24|1|Y|G|1483

Current chains

Chain Y

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein bL28

Chain z

Large ribosomal subunit protein bL34