HL_9BH5_019

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9BH5|1|A5|U|934, 9BH5|1|A5|A|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_019 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.074

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|A|931
9BH5|1|A5|C|932
9BH5|1|A5|G|933
9BH5|1|A5|U|934
9BH5|1|A5|G|935
9BH5|1|A5|C|936
9BH5|1|A5|A|937
9BH5|1|A5|A|938
9BH5|1|A5|A|939
9BH5|1|A5|U|940

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CP

Large ribosomal subunit protein uL22

Chain Cj

Ribosomal protein L37