HL_9BH5_020

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9BH5|1|A5|A|968

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_020 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0958

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|G|965
9BH5|1|A5|C|966
9BH5|1|A5|G|967
9BH5|1|A5|A|968
9BH5|1|A5|A|969
9BH5|1|A5|A|970
9BH5|1|A5|G|971
9BH5|1|A5|A|972
9BH5|1|A5|C|973

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain CN

Large ribosomal subunit protein eL15

Chain Cj

Ribosomal protein L37