HL_9BH5_023

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUUUAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_023 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1479

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9BH5|1|A5|C|1130
9BH5|1|A5|U|1131
9BH5|1|A5|U|1132
9BH5|1|A5|U|1133
9BH5|1|A5|A|1134
9BH5|1|A5|G|1135
9BH5|1|A5|U|1136
9BH5|1|A5|G|1137

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CD

Large ribosomal subunit protein uL18

Chain CT

Large ribosomal subunit protein eL21

Chain Cb

60S ribosomal protein L29