HL_9BH5_038
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGCAUUAG
- Length
- 8 nucleotides
- Bulged bases
- 9BH5|1|A5|C|1939, 9BH5|1|A5|U|1941, 9BH5|1|A5|A|1943
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_038 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.089
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9BH5|1|A5|C|1937
9BH5|1|A5|G|1938
9BH5|1|A5|C|1939
9BH5|1|A5|A|1940
9BH5|1|A5|U|1941
9BH5|1|A5|U|1942
9BH5|1|A5|A|1943
9BH5|1|A5|G|1944
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CP
- Large ribosomal subunit protein uL22
- Chain Cj
- Ribosomal protein L37
- Chain Cl
- Large ribosomal subunit protein eL39
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