HL_9BH5_043
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2242, 9BH5|1|A5|A|2243, 9BH5|1|A5|U|2244, 9BH5|1|A5|A|2248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_043 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1445
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
9BH5|1|A5|U|2239
9BH5|1|A5|C|2240
9BH5|1|A5|U|2241
9BH5|1|A5|A|2242
9BH5|1|A5|A|2243
9BH5|1|A5|U|2244
9BH5|1|A5|U|2245
9BH5|1|A5|A|2246
9BH5|1|A5|A|2247
9BH5|1|A5|A|2248
9BH5|1|A5|A|2249
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain Cj
- Ribosomal protein L37
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