HL_9BH5_046
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9BH5_046 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1181
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9BH5|1|A5|G|2356
9BH5|1|A5|U|2357
9BH5|1|A5|A|2358
9BH5|1|A5|A|2359
9BH5|1|A5|C|2360
9BH5|1|A5|U|2361
9BH5|1|A5|A|2362
9BH5|1|A5|U|2363
9BH5|1|A5|G|2364
9BH5|1|A5|A|2365
9BH5|1|A5|C|2366
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain AP
- Small ribosomal subunit protein uS19
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain DA
- Transfer RNA; tRNA
- Chain DB
- Transfer RNA; tRNA
- Chain DC
- mRNA
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