HL_9BH5_058

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGUCCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_058 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1293

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|C|2952
9BH5|1|A5|G|2953
9BH5|1|A5|U|2954
9BH5|1|A5|C|2955
9BH5|1|A5|C|2956
9BH5|1|A5|A|2957
9BH5|1|A5|U|2958
9BH5|1|A5|A|2959
9BH5|1|A5|G|2960

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CI

Large ribosomal subunit protein uL16

Chain Cm

Ubiquitin-ribosomal protein eL40 fusion protein

Chain DB

Transfer RNA; tRNA