HL_9BH5_059

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9BH5|1|A5|G|3010, 9BH5|1|A5|A|3012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9BH5_059 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.5879

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9BH5|1|A5|A|3009
9BH5|1|A5|G|3010
9BH5|1|A5|C|3011
9BH5|1|A5|A|3012
9BH5|1|A5|G|3013
9BH5|1|A5|A|3014
9BH5|1|A5|A|3015
9BH5|1|A5|U|3016

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CH

Large ribosomal subunit protein uL6

Chain Cm

Ubiquitin-ribosomal protein eL40 fusion protein